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Revision 6428

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Author: rickb
Date: Wed Nov 12 19:59:02 2008 UTC (4 years, 6 months ago)
Log Message: 
JIRA Issue #PDBWW-1241 - Ligands missing from the dictionary are now looked up on the pdb site and bonds created from that.  Fallback is still to calculate bonds.

Changed paths:

Path Details
DirectoryRCSB Viewers/trunk/RCSB CLTools/.classpath modified , text changed
DirectoryRCSB Viewers/trunk/RCSB CLTools/CL Tools/org/rcsb/pw/tools/ChemicalComponentBondsCreator.java modified , text changed
DirectoryRCSB Viewers/trunk/RCSB MBT Libs/.classpath modified , text changed
DirectoryRCSB Viewers/trunk/RCSB MBT Libs/Structure Model/org/rcsb/mbt/model/util/ChemicalComponentBonds.dat modified , text changed
DirectoryRCSB Viewers/trunk/RCSB MBT Libs/Structure Model/org/rcsb/mbt/model/util/ChemicalComponentBonds.java modified , text changed
DirectoryRCSB Viewers/trunk/RCSB MBT Libs/temp-testng-customsuite.xml deleted
DirectoryRCSB Viewers/trunk/RCSB MBT Libs/test-input/ComprehensiveStructureTest/Expected/1BUZ_xml_gz.txt.gz modified , text changed
DirectoryRCSB Viewers/trunk/RCSB MBT Libs/test-input/ComprehensiveStructureTest/Expected/1ES0_pdb.txt.gz modified , text changed
DirectoryRCSB Viewers/trunk/RCSB MBT Libs/test-input/ComprehensiveStructureTest/Expected/1GIX_pdb.txt.gz modified , text changed
DirectoryRCSB Viewers/trunk/RCSB MBT Libs/test-input/ComprehensiveStructureTest/Expected/1GIX_xml_gz.txt.gz modified , text changed
DirectoryRCSB Viewers/trunk/RCSB MBT Libs/test-input/ComprehensiveStructureTest/Expected/1GIY_pdb.txt.gz modified , text changed
DirectoryRCSB Viewers/trunk/RCSB MBT Libs/test-input/ComprehensiveStructureTest/Expected/1GIY_xml_gz.txt.gz modified , text changed
DirectoryRCSB Viewers/trunk/RCSB MBT Libs/test-input/ComprehensiveStructureTest/Expected/1I5D_pdb.txt.gz modified , text changed
DirectoryRCSB Viewers/trunk/RCSB MBT Libs/test-input/ComprehensiveStructureTest/Expected/1I5D_xml.txt.gz modified , text changed
DirectoryRCSB Viewers/trunk/RCSB MBT Libs/test-input/ComprehensiveStructureTest/Expected/1I5D_xml_gz.txt.gz modified , text changed
DirectoryRCSB Viewers/trunk/RCSB MBT Libs/test-input/ComprehensiveStructureTest/Expected/1Q70_pdb.txt.gz modified , text changed
DirectoryRCSB Viewers/trunk/RCSB MBT Libs/test-input/ComprehensiveStructureTest/Expected/1STP_pdb1_gz.txt.gz modified , text changed
DirectoryRCSB Viewers/trunk/RCSB MBT Libs/test-input/ComprehensiveStructureTest/Expected/1STP_xml_gz.txt.gz modified , text changed
DirectoryRCSB Viewers/trunk/RCSB MBT Libs/test-input/ComprehensiveStructureTest/Expected/1buz_pdb.txt.gz modified , text changed
DirectoryRCSB Viewers/trunk/RCSB MBT Libs/test-input/ComprehensiveStructureTest/Expected/1es0_xml.txt.gz modified , text changed
DirectoryRCSB Viewers/trunk/RCSB MBT Libs/test-input/ComprehensiveStructureTest/Expected/1es0_xml_gz.txt.gz modified , text changed
DirectoryRCSB Viewers/trunk/RCSB MBT Libs/test-input/ComprehensiveStructureTest/Expected/1x7b_pdb_gz.txt.gz modified , text changed
DirectoryRCSB Viewers/trunk/RCSB MBT Libs/test-input/ComprehensiveStructureTest/Expected/1x7b_xml_gz.txt.gz modified , text changed
DirectoryRCSB Viewers/trunk/RCSB MBT Libs/test-input/ComprehensiveStructureTest/Expected/2EKG_pdb_gz.txt.gz modified , text changed
DirectoryRCSB Viewers/trunk/RCSB MBT Libs/test-input/ComprehensiveStructureTest/Expected/2EKG_xml_gz.txt.gz modified , text changed
DirectoryRCSB Viewers/trunk/RCSB MBT Libs/test-input/ComprehensiveStructureTest/Expected/2ELG_pdb_gz.txt.gz modified , text changed
DirectoryRCSB Viewers/trunk/RCSB MBT Libs/test-input/ComprehensiveStructureTest/Expected/2ELG_xml_gz.txt.gz modified , text changed
DirectoryRCSB Viewers/trunk/RCSB MBT Libs/test-input/ComprehensiveStructureTest/Expected/2FTE_pdb1_gz.txt.gz modified , text changed
DirectoryRCSB Viewers/trunk/RCSB MBT Libs/test-input/ComprehensiveStructureTest/Expected/2FTE_xml_gz.txt.gz modified , text changed
DirectoryRCSB Viewers/trunk/RCSB MBT Libs/test-input/ComprehensiveStructureTest/Expected/2H2Q_xml_gz.txt.gz modified , text changed
DirectoryRCSB Viewers/trunk/RCSB MBT Libs/test-input/ComprehensiveStructureTest/Expected/2QS2_xml_gz.txt.gz modified , text changed
DirectoryRCSB Viewers/trunk/RCSB MBT Libs/test-input/ComprehensiveStructureTest/Expected/4hhb_pdb_gz.txt.gz modified , text changed
DirectoryRCSB Viewers/trunk/RCSB MBT Libs/test-input/ComprehensiveStructureTest/Expected/4hhb_xml_gz.txt.gz modified , text changed
DirectoryRCSB Viewers/trunk/RCSB Viewer Jars/RCSBKiosk/RCSB-Kiosk.jar modified , text changed
DirectoryRCSB Viewers/trunk/RCSB Viewer Jars/RCSBSupport/RCSB-MBT-Controllers.jar modified , text changed
DirectoryRCSB Viewers/trunk/RCSB Viewer Jars/RCSBSupport/RCSB-MBT-GLScene.jar modified , text changed
DirectoryRCSB Viewers/trunk/RCSB Viewer Jars/RCSBSupport/RCSB-MBT-StructureLoader.jar modified , text changed
DirectoryRCSB Viewers/trunk/RCSB Viewer Jars/RCSBSupport/RCSB-MBT-StructureModel.jar modified , text changed
DirectoryRCSB Viewers/trunk/RCSB Viewer Jars/RCSBSupport/RCSB-MBT-UI.jar modified , text changed
DirectoryRCSB Viewers/trunk/RCSB Viewer Jars/RCSBSupport/RCSB-ViewerFramework.jar modified , text changed
DirectoryRCSB Viewers/trunk/RCSB Viewer Jars/RCSBViewers/RCSB-LigandExplorer.jar modified , text changed
DirectoryRCSB Viewers/trunk/RCSB Viewer Jars/RCSBViewers/RCSB-ProteinWorkshop.jar modified , text changed
DirectoryRCSB Viewers/trunk/RCSB Viewer Jars/RCSBViewers/RCSB-SimpleViewer.jar modified , text changed
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