CVS log for bioperl-live/Bio/Tools/Sigcleave.pm

CVS log for bioperl-live/Bio/Tools/Sigcleave.pm
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Revision 1.24 / (view) - annotate - [select for diffs] , Thu Jun 14 13:16:17 2007 UTC (12 months, 3 weeks ago) by sendu
Branch: MAIN
CVS Tags: lightweight_feature_branch, lightweight_feature, featann_rollback, HEAD
Changes since 1.23: +4 -4 lines
Diff to previous 1.23

removed bad "new Bio::Module" syntax, replaced with "Bio::Module->new"

Revision 1.22.4.1 / (view) - annotate - [select for diffs] , Mon Oct 2 22:10:32 2006 UTC (21 months ago) by sendu
Branch: branch-1-5-2
CVS Tags: bioperl-release-1-5-2-patch2, bioperl-release-1-5-2-patch1, bioperl-release-1-5-2
Changes since 1.22: +3 -4 lines
Diff to previous 1.22 to next main 1.23

merge from HEAD

Revision 1.23 / (view) - annotate - [select for diffs] , Tue Sep 26 21:03:17 2006 UTC (21 months, 1 week ago) by sendu
Branch: MAIN
Changes since 1.22: +3 -4 lines
Diff to previous 1.22

use base, return true

Revision 1.22 / (view) - annotate - [select for diffs] , Tue Jul 4 21:23:24 2006 UTC (2 years ago) by mauricio
Branch: MAIN
CVS Tags: gbrowse_1_65, branch-experimental
Branch point for: branch-1-5-2
Changes since 1.21: +3 -3 lines
Diff to previous 1.21

Updated bug reporting

Revision 1.21 / (view) - annotate - [select for diffs] , Thu Nov 17 09:54:50 2005 UTC (2 years, 7 months ago) by heikki
Branch: MAIN
Changes since 1.20: +3 -3 lines
Diff to previous 1.20

I'll be using bioperl.org mail address from now on documents

Revision 1.20 / (view) - annotate - [select for diffs] , Tue Sep 27 12:08:46 2005 UTC (2 years, 9 months ago) by jason
Branch: MAIN
CVS Tags: bioperl-release-1-5-1-rc4, bioperl-release-1-5-1, bioperl-branch-1-5-1
Changes since 1.19: +6 -7 lines
Diff to previous 1.19

POD update; standardize bug reporting info, remove bugs email link, make sure $Id$ is present

Revision 1.19 / (view) - annotate - [select for diffs] , Thu Nov 11 03:53:10 2004 UTC (3 years, 7 months ago) by bosborne
Branch: MAIN
CVS Tags: for_gmod_0_003, bioperl-release-1-5-0-rc2, bioperl-release-1-5-0
Changes since 1.18: +100 -111 lines
Diff to previous 1.18

POD corrections

Revision 1.18 / (view) - annotate - [select for diffs] , Wed Jun 4 07:36:43 2003 UTC (5 years, 1 month ago) by heikki
Branch: MAIN
CVS Tags: branch-1-4, bioperl-release-1-5-0-rc1, bioperl-release-1-4-0, bioperl-devel-1-3-04, bioperl-devel-1-3-03, bioperl-devel-1-3-02, bioperl-devel-1-3-01
Changes since 1.17: +3 -5 lines
Diff to previous 1.17

removed module specific $VERSION, all modules now use global one from Bio::Root::Version

Revision 1.17 / (view) - annotate - [select for diffs] , Tue Oct 22 06:45:22 2002 UTC (5 years, 8 months ago) by lapp
Branch: MAIN
CVS Tags: branch-1-2-collection, branch-1-2, bioperl-run-release-1-2-0, bioperl-release-1-2-3, bioperl-release-1-2-2, bioperl-release-1-2-1, bioperl-release-1-2-0, bioperl-1-2-1-rc1
Changes since 1.16: +3 -3 lines
Diff to previous 1.16

Replaced bioperl.org/bioperl-bugs/ with bugzilla.bioperl.org.

Revision 1.16 / (view) - annotate - [select for diffs] , Wed Oct 2 13:15:58 2002 UTC (5 years, 9 months ago) by heikki
Branch: MAIN
CVS Tags: bioperl-devel-1-1-1
Changes since 1.15: +371 -263 lines
Diff to previous 1.15

fixes bug #948.

In the end, I rewrote the module to work more like the EMBOSS sigcleave. It
can now take in a Bio::PrimarySeqI objects, in addition to sequence string, as a parameter.
Also, procaryotic weight matrix is now built in.

Revision 1.15 / (view) - annotate - [select for diffs] , Mon Jul 29 20:48:43 2002 UTC (5 years, 11 months ago) by jason
Branch: MAIN
CVS Tags: bioperl-release-1-1-0
Changes since 1.14: +3 -3 lines
Diff to previous 1.14

some updates so the CPAN rendered modules have the correct name

Revision 1.14 / (view) - annotate - [select for diffs] , Tue Jun 18 23:35:26 2002 UTC (6 years ago) by jason
Branch: MAIN
Changes since 1.13: +3 -3 lines
Diff to previous 1.13

doc fix

Revision 1.13 / (view) - annotate - [select for diffs] , Thu May 9 16:57:29 2002 UTC (6 years, 1 month ago) by bosborne
Branch: MAIN
Changes since 1.12: +8 -5 lines
Diff to previous 1.12

Corrected POD example

Revision 1.12.2.1 / (view) - annotate - [select for diffs] , Thu Jun 21 14:36:05 2001 UTC (7 years ago) by heikki
Branch: branch-07
CVS Tags: release-0-7-2, release-0-7-1, branch-07-ensembl-120
Changes since 1.12: +4 -4 lines
Diff to previous 1.12 to next main 1.13

$VERSION is $version in all other files exept Bio/Seq.pm (and t/Test.pm)

Revision 1.12 / (view) - annotate - [select for diffs] , Fri Dec 29 07:43:27 2000 UTC (7 years, 6 months ago) by lapp
Branch: MAIN
CVS Tags: snapshot-at-head-of-07-branch, release-0-9-3, release-0-9-2, release-0-9-0, release-0-7-0, branch-1-0-0, bioperl-release-1-0-2, bioperl-release-1-0-1, bioperl-release-1-0-0, bioperl-1-0-alpha2-rc, bioperl-1-0-alpha, bioperl-1-0-0
Branch point for: branch-07
Changes since 1.11: +7 -7 lines
Diff to previous 1.11

Quoted unquoted string literals used as hash keys.

Revision 1.11 / (view) - annotate - [select for diffs] , Fri Dec 15 20:31:53 2000 UTC (7 years, 6 months ago) by birney
Branch: MAIN
Changes since 1.10: +8 -31 lines
Diff to previous 1.10

moved PrimarySeq and Seq to RootI style news. Fixed the knock on effects. LargeSeq/LargeFasta fail - cant fix them

Revision 1.10 / (view) - annotate - [select for diffs] , Wed Dec 13 18:54:48 2000 UTC (7 years, 6 months ago) by dag
Branch: MAIN
Changes since 1.9: +6 -8 lines
Diff to previous 1.9

 per request of Sanger Center webteam I've removed a dead URL that used to point to the EGCG docs. cdagdigian

Revision 1.9.2.1 / (view) - annotate - [select for diffs] , Fri Sep 15 07:24:24 2000 UTC (7 years, 9 months ago) by jgrg
Branch: branch-06
CVS Tags: release-06-2
Changes since 1.9: +2 -26 lines
Diff to previous 1.9 to next main 1.10

Fixes to bioperl mailing lists in POD

Revision 1.9 / (view) - annotate - [select for diffs] , Mon Feb 14 13:37:59 2000 UTC (8 years, 4 months ago) by birney
Branch: MAIN
CVS Tags: tag-ensembl-stable-061, release-06, bioperl-061-pre1, bioperl-06-1
Branch point for: branch-06
Changes since 1.8: +6 -6 lines
Diff to previous 1.8

got the tests to pass

Revision 1.8 / (view) - annotate - [select for diffs] , Sat Feb 27 12:35:31 1999 UTC (9 years, 4 months ago) by birney
Branch: MAIN
CVS Tags: stable-0-05-new, stable-0-05, release-ensembl-06, release-0-05-1, release-0-05, prerelease-06, join-0-04-to-0-05, internal-branch-pre-delete-06-tag, branch-ensembl-m1, bioperl-live, before-05-to-06-trunk, before-05-to-06-merge, after-05-06-merge-2, after-05-06-merge
Changes since 1.7: +0 -0 lines
Diff to previous 1.7

*** empty log message ***

Revision 1.7 , Sat Feb 27 12:27:53 1999 UTC (9 years, 4 months ago) by sac
Branch: MAIN
Changes since 1.6: +2 -2 lines
FILE REMOVED

Merged release-0-04-bug with the trunk. All test successful. Still need to add back Sigcleave files.

Revision 1.6.2.2 , Thu Feb 4 16:14:03 1999 UTC (9 years, 5 months ago) by dag
Branch: release-0-04-bug
Changes since 1.6.2.1: +2 -2 lines
FILE REMOVED

 Removed all things associated with Sigcleave.pm from this bug branch :)

Revision 1.6.2.1 / (view) - annotate - [select for diffs] , Wed Feb 3 21:44:24 1999 UTC (9 years, 5 months ago) by dag
Branch: release-0-04-bug
Changes since 1.6: +2 -2 lines
Diff to previous 1.6

 Added Sigcleave.pm to the bioperl-0-04-bug branch

Revision 1.6 / (view) - annotate - [select for diffs] , Wed Feb 3 19:56:51 1999 UTC (9 years, 5 months ago) by dag
Branch: MAIN
Branch point for: release-0-04-bug
Changes since 1.5: +5 -5 lines
Diff to previous 1.5

 POD tweak.

Revision 1.5 / (view) - annotate - [select for diffs] , Wed Feb 3 19:49:27 1999 UTC (9 years, 5 months ago) by dag
Branch: MAIN
Changes since 1.4: +17 -4 lines
Diff to previous 1.4

 Finished validation test on 405 Swissprot sequences. Adjusted POD to mention this.

Revision 1.4 / (view) - annotate - [select for diffs] , Wed Feb 3 01:19:21 1999 UTC (9 years, 5 months ago) by dag
Branch: MAIN
Changes since 1.3: +59 -29 lines
Diff to previous 1.3

 Put old-school method for calculating weight table back in. The 'new' way was
 not generating accurate results. Oh well,at the expense of some speed we get
 more accurate scores.

Revision 1.3 / (view) - annotate - [select for diffs] , Tue Feb 2 18:49:07 1999 UTC (9 years, 5 months ago) by dag
Branch: MAIN
Changes since 1.2: +31 -7 lines
Diff to previous 1.2

 Added to POD docs

Revision 1.2 / (view) - annotate - [select for diffs] , Sun Jan 31 21:49:16 1999 UTC (9 years, 5 months ago) by dag
Branch: MAIN
Changes since 1.1: +24 -8 lines
Diff to previous 1.1

 Fixed some stuff so that warnings go away during 'make test'

Revision 1.1 / (view) - annotate - [select for diffs] , Sun Jan 31 20:45:08 1999 UTC (9 years, 5 months ago) by dag
Branch: MAIN

 Adding to repository. Sigcleave.pm --> egcg sigcleave emulation code

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CVS log for bioperl-live/Bio/Tools/Sigcleave.pm

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