| File |
Rev. |
Age |
Author |
Last log entry |
Alignment/
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Analysis/
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AnalysisFactory/
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Attic/
[show contents]
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Phylo/
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PiseApplication/
|
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Analysis.pm
|
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1.12
|
14 months |
sendu |
removed bad "new Bio::Module" syntax, replaced with "Bio::Module->new"
|
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AnalysisFactory.pm
|
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1.11
|
14 months |
sendu |
removed bad "new Bio::Module" syntax, replaced with "Bio::Module->new"
|
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Cap3.pm
|
|
1.6
|
23 months |
sendu |
POD cleanup
|
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Coil.pm
|
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1.13
|
21 months |
nathan |
some clarification of COILSDIR
|
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EMBOSSApplication.pm
|
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1.29
|
14 months |
sendu |
removed bad "new Bio::Module" syntax, replaced with "Bio::Module->new"
|
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EMBOSSacd.pm
|
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1.10
|
14 months |
sendu |
removed bad "new Bio::Module" syntax, replaced with "Bio::Module->new"
|
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ERPIN.pm
|
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1.2
|
16 months |
cjfields |
fix some funkiness with pipes; may switch to IPC::Run at some point
|
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Eponine.pm
|
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1.17
|
17 months |
nathan |
Added POD for predict_TSS() as alias to run()
|
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FootPrinter.pm
|
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1.21
|
17 months |
bosborne |
Correct address, minor edits
|
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Genemark.pm
|
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1.4
|
16 months |
cjfields |
fix some funkiness with pipes; may switch to IPC::Run at some point
|
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Genewise.pm
|
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1.26
|
2 years |
mauricio |
Updated bug reporting
|
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Genscan.pm
|
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1.16
|
21 months |
nathan |
Mention of GENSCANDIR in POD
|
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Glimmer.pm
|
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1.3
|
13 months |
cjfields |
bug 2299
|
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Hmmer.pm
|
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1.11
|
13 months |
sendu |
modified running of hmmbuild, hmmcalibrate to match docs: returns boolean for su... |
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Infernal.pm
|
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1.4
|
16 months |
cjfields |
fix some funkiness with pipes; may switch to IPC::Run at some point
|
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Mdust.pm
|
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1.10
|
9 months |
djackson |
Modified Bio::Tools::Run::Mdust.pm to accept Bio::PrimarySeqI objects as targets... |
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Phrap.pm
|
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1.6
|
2 years |
mauricio |
Updated bug reporting
|
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PiseApplication.pm
|
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1.10
|
14 months |
sendu |
removed bad "new Bio::Module" syntax, replaced with "Bio::Module->new"
|
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PiseJob.pm
|
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1.19
|
14 months |
sendu |
removed bad "new Bio::Module" syntax, replaced with "Bio::Module->new"
|
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PiseJobParser.pm
|
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1.9
|
2 years |
mauricio |
Updated bug reporting
|
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PiseWorkflow.pm
|
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1.3
|
14 months |
sendu |
removed bad "new Bio::Module" syntax, replaced with "Bio::Module->new"
|
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Primate.pm
|
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1.17
|
14 months |
sendu |
removed bad "new Bio::Module" syntax, replaced with "Bio::Module->new"
|
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Primer3.pm
|
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1.18
|
2 years |
mauricio |
Updated bug reporting
|
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Prints.pm
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1.11
|
2 years |
mauricio |
Updated bug reporting
|
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Profile.pm
|
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1.14
|
2 years |
mauricio |
Updated bug reporting
|
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Promoterwise.pm
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1.9
|
2 years |
mauricio |
Updated bug reporting
|
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Pseudowise.pm
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1.18
|
2 years |
mauricio |
Updated bug reporting
|
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RNAMotif.pm
|
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1.5
|
16 months |
cjfields |
small fix: RNAMotif can have empty files (will add a better workaround later)
|
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RepeatMasker.pm
|
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1.26
|
19 months |
sendu |
doc clarification, update
|
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Seg.pm
|
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1.16
|
2 years |
mauricio |
Updated bug reporting
|
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Signalp.pm
|
|
1.10
|
2 years |
mauricio |
Updated bug reporting
|
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Simprot.pm
|
|
1.5
|
14 months |
sendu |
removed bad "new Bio::Module" syntax, replaced with "Bio::Module->new"
|
|
TigrAssembler.pm
|
|
1.1
|
8 months |
fangly |
Added a new module to runTIGR Assembler
|
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Tmhmm.pm
|
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1.19
|
21 months |
sendu |
fixed to set -basedir properly and to use tempdir for working directory
|
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TribeMCL.pm
|
|
1.22
|
21 months |
sendu |
sane Species creation
|
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Vista.pm
|
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1.14
|
2 years |
mauricio |
Updated bug reporting
|
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tRNAscanSE.pm
|
|
1.1
|
16 months |
cjfields |
wrapper for tRNAscanSE
|
