| File |
Rev. |
Age |
Author |
Last log entry |
Attic/
[show contents]
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data/
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lib/
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Amap.t
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1.5
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21 months |
nathan |
delete mlc after finish
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AnalysisFactory_soap.t
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1.2
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21 months |
nathan |
Updated to Test::More and additional tests made
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Analysis_soap.t
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1.6
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21 months |
nathan |
Updated to Test::More and additional tests made
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Blat.t
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1.11
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2 years |
jason |
up to 1775 not 1776
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Clustalw.t
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1.36
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14 months |
sendu |
tidy up; test that score is set on the alignment
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Coil.t
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1.3
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5 years |
shawnh |
Make quiet
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Consense.t
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1.6
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14 months |
sendu |
removed bad "new Bio::Module" syntax, replaced with "Bio::Module->new"
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DBA.t
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1.3
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6 years |
shawnh |
check for exe
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DrawGram.t
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1.3
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14 months |
sendu |
removed bad "new Bio::Module" syntax, replaced with "Bio::Module->new"
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DrawTree.t
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1.3
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14 months |
sendu |
removed bad "new Bio::Module" syntax, replaced with "Bio::Module->new"
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EMBOSS.t
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1.17
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14 months |
sendu |
removed bad "new Bio::Module" syntax, replaced with "Bio::Module->new"
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Eponine.t
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1.8
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2 years |
jason |
simplify java version lookup
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Exonerate.t
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1.4
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2 years |
jason |
test rev com too
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FootPrinter.t
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1.2
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21 months |
sendu |
parser might have changed, but test expected the wrong answer; fixed. v2.1 of Fo... |
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Genemark.hmm.prokaryotic.t
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1.3
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14 months |
sendu |
corrected skip
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Genewise.t
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1.14
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21 months |
sendu |
exit(0) as soon we know genewise is not installed
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Genscan.t
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1.7
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21 months |
nathan |
corrected env variable usage to match the module
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Glimmer2.t
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1.4
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13 months |
cjfields |
bug 2299
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Glimmer3.t
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1.4
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13 months |
cjfields |
bug 2299
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Gumby.t
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1.2
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9 months |
sendu |
updated to work with new B::SF::Annotated behaviour
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Hmmer.t
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1.5
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13 months |
sendu |
converted to BioperlTest; added tests for hmmcalibrate and hmmemit
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Hyphy.t
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1.3
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14 months |
sendu |
moved to Test::More, corrected skip; NB: insufficient testing!
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Kalign.t
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1.1
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23 months |
avilella |
simple test taken from Amap.t -- avg 42
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LVB.t
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1.1
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3 years |
jason |
LVB changes by Daniel
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Lagan.t
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1.2
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17 months |
sendu |
allow setting of the substitution matrix for mlagan with new method nuc_matrix()... |
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MAFFT.t
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1.2
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2 years |
jason |
Tcoffee --> MAFFT, version stuff removed, allow percent ID to waver a little
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Mdust.t
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1.4
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9 months |
djackson |
Modified Bio::Tools::Run::Mdust.pm to accept Bio::PrimarySeqI objects as targets... |
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Molphy.t
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1.8
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14 months |
sendu |
removed bad "new Bio::Module" syntax, replaced with "Bio::Module->new"
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Muscle.t
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1.6
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21 months |
sendu |
recommend usage of v3.6, tests only run with >= 3.6
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Neighbor.t
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1.9
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19 months |
weigang |
add tests for protecting/restoring sequences with long names
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Njtree.t
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1.3
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14 months |
sendu |
moved to Test::More, corrected skip; NB: insufficient testing!
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PAML.t
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1.17
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8 months |
jason |
Fix some parameters to set values so that tests are consistent
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PhastCons.t
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1.2
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18 months |
sendu |
PhastCons now returns a feature per alignment sequence, with correct coords
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Phrap.t
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1.2
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2 years |
jason |
Phrap tests pass
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Pise.t
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1.8
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21 months |
cjfields |
Change to Test::More
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Primate.t
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1.2
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6 years |
shawnh |
Fixed checking of exe
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Primer3.t
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1.4
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20 months |
sendu |
don't fail if optional Clone module isn't installed
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Prints.t
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1.4
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5 years |
savikalpa |
Generic way of getting the executable(handled by the wrapper).
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Probalign.t
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1.1
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21 months |
avilella |
first version of probalign test -- taken from muscle.t
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Probcons.t
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1.7
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8 months |
avilella |
fixing last two tests
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Profile.t
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1.3
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5 years |
savikalpa |
The code is more generic. EXE location is obtained in the wrapper.
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Promoterwise.t
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1.4
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5 years |
baaron |
small syntax error
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ProtDist.t
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1.17
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14 months |
sendu |
removed masking of variables earlier in scope
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ProtPars.t
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1.10
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14 months |
sendu |
removed masking of variables earlier in scope
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Pseudowise.t
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1.5
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2 years |
jason |
skip where appropriate
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QuickTree.t
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1.1
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20 months |
sendu |
new local QuickTree wrapper
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RepeatMasker.t
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1.11
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21 months |
sendu |
remove file created by RepeatMasker
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SLR.t
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1.2
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8 months |
jason |
avoid double declare msg
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Seg.t
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1.5
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5 years |
savikalpa |
The code is more generic.Executable location is obtained in the wrapper
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SeqBoot.t
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1.3
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19 months |
weigang |
add tests for protecting/restoring sequences with long names
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Signalp.t
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1.1
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5 years |
savikalpa |
test for Signalp
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Sim4.t
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1.2
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5 years |
jason |
update error message
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Simprot.t
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1.2
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14 months |
sendu |
moved to Test::More, corrected skip; NB: insufficient testing!
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StandAloneFasta.t
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1.5
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21 months |
sendu |
remove created resultfile
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TCoffee.t
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1.26
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21 months |
sendu |
neaten skip output
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TigrAssembler.t
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1.1
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8 months |
fangly |
Added a new module to runTIGR Assembler
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Tmhmm.t
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1.8
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20 months |
sendu |
corrected number of tests
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TribeMCL.t
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1.10
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5 years |
shawnh |
Check for Algorithm::Diff dependency before running tests
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Vista.t
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1.2
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5 years |
shawnh |
Support more options
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tRNAscanSE.t
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1.2
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14 months |
sendu |
corrected skip
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