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Date File Revision Author Revision Log
2008/08/03 03:52:04 294 294 lapp Fixed to work with the latest phylodb schema. Added ability to download from
ITIS website automatically. Simplified DSN construction and driver recognition.
2008/08/03 03:50:40 293 293 lapp Checking success of updating parent_taxon_IDs. Somewhat simplifying driver
recognition and DSN construction.
2008/08/02 14:12:20 292 292 lapp Fixed cardinality direction for columns and OTUs.
2008/08/02 13:53:57 291 291 lapp Small typo (forgot to add the Pg version#). Not nice.
2008/08/02 12:26:53 290 290 lapp Tagging release v1.0.1.
Copied from /biosql-schema/branches/biosql-release-1-0:279
Copied from /biosql-schema/branches/biosql-release-1-0/Changes:289
Copied from /biosql-schema/branches/biosql-release-1-0/INSTALL:289
Copied from /biosql-schema/branches/biosql-release-1-0/scripts/load_ncbi_taxonomy.pl:289
Copied from /biosql-schema/branches/biosql-release-1-0/sql/biosqldb-derby.sql:289
Copied from /biosql-schema/branches/biosql-release-1-0/sql/biosqldb-hsqldb.sql:289
Copied from /biosql-schema/branches/biosql-release-1-0/sql/biosqldb-mysql.sql:289
Copied from /biosql-schema/branches/biosql-release-1-0/sql/biosqldb-ora/migrate/1.0/biosqldb-ora-1.0.1.sql:289
Copied from /biosql-schema/branches/biosql-release-1-0/sql/biosqldb-pg.sql:289
Copied from /biosql-schema/branches/biosql-release-1-0/sql/migrate:289
Copied from /biosql-schema/branches/biosql-release-1-0/sql/pg83-add-old-casts.sh:289
Copied from /biosql-schema/branches/biosql-release-1-0/sql/pg83-implicit-casts.sql:289
2008/08/02 12:22:05 289 289 lapp Merging changes for v1.0.1 from the main trunk to the 1.0 branch.
Copied from /biosql-schema/trunk/sql/biosqldb-ora/migrate/1.0/biosqldb-ora-1.0.1.sql:286
Copied from /biosql-schema/trunk/sql/migrate:286
Copied from /biosql-schema/trunk/sql/pg83-add-old-casts.sh:286
Copied from /biosql-schema/trunk/sql/pg83-implicit-casts.sql:286
2008/08/01 18:36:32 288 288 lapp Fixed documentation in load_ncbi_taxonomy script. Added Changes items for this
release.
2008/08/01 17:15:52 287 287 lapp Fixed to no longer require the primary key for taxon nodes to be equal to the
NCBI taxonID.
2008/08/01 04:17:56 286 286 lapp Widened bioentry.accession and dbxref.accession to 128 chars. Added migration
scripts for v1.0.1 (which this will constitute).
2008/08/01 04:16:22 285 285 lapp Fixing inconsistencies in how the biosql database is named. Added a note about
compatibility (i.e., lack thereof) with Pg v8.3+.
2008/08/01 04:13:34 284 284 lapp Adding scripts for adding back the automatic typecasts in PostgreSQL v8.3+, from
Peter Eisentrauts blog.
2008/08/01 00:55:44 283 283 lapp Caught up with the latest additions to the PhyloDB module so those get deleted
too.
2008/07/30 15:01:43 282 282 lapp Added foreign key constraints for tree_dbxref and node_dbxref.
2008/07/29 19:16:37 281 281 lapp Added diagrams for possible models for the components of a phylogenetic
analysis and for expressing an evolutionary transition model.
2008/07/29 19:13:22 280 280 lapp Adding PNG format as exported format in addition to PDF. Updated the diagram
to the latest changes from the 2008 BioHackathon and regenerated all exports.
2008/03/05 23:16:12 279 279 lapp Release notes for v1.0.0.
2008/03/05 15:40:32 278 278 lapp Tagging the 1.0.0 release. Closing in ...
Copied from /biosql-schema/branches/biosql-release-1-0:277
2008/03/03 04:54:07 277 277 lapp Removed phyloDB changes as they do not pertain to this release.
2008/03/03 02:56:08 276 276 lapp Apparently this wasn't auto-recognized as mimetype text/html.
2008/02/24 16:51:29 275 275 lapp Merged updates from main trunk (#274).